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SeqyClean

Filters adapters, vectors, and contaminants while quality trimming

https://github.com/ibest/seqyclean

SeqyClean is a comprehensive preprocessing software application for NGS reads, that removes noise from FastQ files to improve de-novo genome assembly and genome mapping.

The module parses the *SummaryStatistics.tsv files that results from a SeqyClean cleaning.

File search patterns

seqyclean:
fn: "*_SummaryStatistics.tsv"